Semantisk parser 0.90: Citing och Says

2013-03-05

Nu tror jag den gör subjekten rätt genom att inte skriva över konvergens-roller utan addera på varje. Egentligen ska det tycker jag inte lösa problemet och prövade addera en liten fix för det som dock inte fungerade. Kanske jag som tittade fel.


The cell deforms and gains traction,traction som detekterad NP-fras nedan är jag nöjd med. Visar på att den förstår lite utanför grammatiken om ämnet. Indata:


"The cell deforms and gains traction as transmembrane integrins distributed over the outer cell membrane bond to ligands on the ECM surface, activate SFs, and form focal adhesions. The relationship between the cell migration speed and fibronectin concentration agrees with existing experimental data for Chinese hamster ovary (CHO) cell migrations on fibronectin coated surfaces. In addition, the integrated model is validated by showing persistent high stress concentrations at sharp geometrically patterned edges. This model will be used as a predictive model to assist in design and data processing of upcoming microfluidic cell migration assays.";

Från: Dynamic Modeling of Cell Migration and Spreading Behaviors on Fibronectin Coated Planar Substrates and Micropatterned Geometries | PLOS Computational Biology

Komma separerade fält enligt:



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&chunk_semantics__dirty_questions("str",$marker_1,$marker_2,$clause,"phrase") . "," . 
&chunk_semantics__dirty_questions("str",$marker_1,$marker_2,$clause,"proto concept") . "," . 
&chunk_semantics__dirty_questions("str",$marker_1,$marker_2,$clause,"pos") . "," . 
&chunk_semantics__dirty_questions("str",$marker_1,$marker_2,$clause,"proto pos") . "," . 
&chunk_semantics__dirty_questions("str",$marker_1,$marker_2,$clause,"phrase convergence role") . "," . 
&chunk_semantics__dirty_questions("str",$marker_1,$marker_2,$clause,"phrase convergence role relations") . "," . 
&chunk_semantics__dirty_questions("str",$marker_1,$marker_2,$clause,"PP-transformation operator") . "," . 
&chunk_semantics__dirty_questions("str",$marker_1,$marker_2,$clause,"VP-transformation operator");

Semantiken:



SENTENCE:0
0:NP,The cell deforms and gains traction,traction,NN,NP,SUBJECT SUBJECT,1 14 3,,14 3
1:PP,as,as,IN,PP,PP-transformation operator,0 2,,14
2:NP,transmembrane integrins,integrins,NNS,NP,INDIRECT-OBJECT,1,1,
3:VP,distributed,distributed,VBN,VP/S,VP,0 13 14 16 4 6,,
4:PP,over,over,IN,PP,PP-transformation operator,3 5,,
5:NP,the outer cell membrane bond,bond,NN,NP,INDIRECT-OBJECT,4,4,
6:PP,to,to,TO,PP,PP-transformation operator,3 7,,
7:NP,ligands,ligands,NNS,NP,INDIRECT-OBJECT,6 8,6,
8:PP,on,on,IN,PP,PP-transformation operator,7 9,,
9:NP,the ECM surface,surface,NN,NP,INDIRECT-OBJECT,10 11 12 8,8,
10:O,COMMA,COMMA,COMMA,NOFUNC,COMMA,9,,
11:NP,activate SFs,SFs,NNP,NP,,9,,
12:O,COMMA,COMMA,COMMA,NOFUNC,COMMA,9,,
13:CC AND,and,and,CC,NOFUNC,CC AND,14 3,,
14:VP,form,form,NN,VP/S,VP,0 13 15 16 3,,
15:NP,focal adhesions,adhesions,NNS,NP,OBJECT,14,,
16:O,.,.,.,NOFUNC,.,14 3,,
SENTENCE:1
0:NP,The relationship,relationship,NN,NP,SUBJECT,1 3,,3
1:PP,between,between,IN,PP,PP-transformation operator,0 2,,
2:NP,the cell migration speed and fibronectin concentration,concentration,NN,NP,INDIRECT-OBJECT,1,1,
3:VP,agrees,agrees,VBZ,VP/S,VP,0 16 4,,
4:PP,with,with,IN,PP,PP-transformation operator,3 5,,
5:NP,existing experimental data,data,NNS,NP,INDIRECT-OBJECT,4 6,4,
6:PP,for,for,IN,PP,PP-transformation operator,13 5,,
7:O,Chinese,Chinese,JJ,NOFUNC,,,,
8:O,hamster,hamster,NN,NOFUNC,,,,
9:O,ovary,ovary,JJ,NOFUNC,,,,
10:O,(,(,(,NOFUNC,,,,
11:NP,CHO,CHO,NNP,NP,,,,
12:O,),),),NOFUNC,,,,
13:NP,cell migrations,migrations,NNS,NP,INDIRECT-OBJECT,14 6 7 8 9,6,
14:PP,on,on,IN,PP,PP-transformation operator,13 15,,
15:NP,fibronectin coated surfaces,surfaces,NNS,NP,INDIRECT-OBJECT,14,14,
16:O,.,.,.,NOFUNC,.,3,,
SENTENCE:2
0:PP,In,In,IN,PP,PP-transformation operator,1 4,,4 6
1:NP,addition,addition,NN,NP,INDIRECT-OBJECT,0,0,
2:O,COMMA,COMMA,COMMA,NOFUNC,COMMA,4,,
3:NP,the integrated model,model,NN,NP,SUBJECT,4,,
4:VP,is validated,validated,VBN,VP/S,VP,0 10 2 3 5,,
5:PP,by,by,IN,PP,PP-transformation operator,4 6,,
6:VP,showing,showing,VBG,VP/S,VP,5 7 8,,
7:NP,persistent high stress concentrations,concentrations,NNS,NP,OBJECT,6,,
8:PP,at,at,IN,PP,PP-transformation operator,6 9,,
9:NP,sharp geometrically patterned edges,edges,NNS,NP,INDIRECT-OBJECT,8,8,
10:O,.,.,.,NOFUNC,.,4,,
SENTENCE:3
0:NP,This model,model,NN,NP,SUBJECT,1,,1 4 8
1:VP,will be used,used,VBN,VP/S,VP,0 10 2 4,,
2:PP,as,as,IN,PP,PP-transformation operator,1 3,,
3:NP,a predictive model,model,NN,NP,INDIRECT-OBJECT,2,2,
4:VP,to assist,assist,VB,VP/S,VP,1 5,,
5:PP,in,in,IN,PP,PP-transformation operator,4 6,,
6:NP,design and data processing,processing,NN,NP,INDIRECT-OBJECT,5 7,5,
7:PP,of,of,IN,PP,PP-transformation operator,6 8,,
8:VP,upcoming,upcoming,VBG,VP/S,VP,7 9,,
9:NP,microfluidic cell migration assays,assays,NNS,NP,OBJECT,8,,
10:O,.,.,.,NOFUNC,.,1,,